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Marine Species Monitoring

Haul-Out Counts and Photo-Identification of Pinnipeds in Virginia

Introduction & Objectives

Harbor seals (Phoca vitulina) and gray seal (Halichoerus grypus atlantica) are year-round coastal inhabitants in eastern Canada and New England, and occur seasonally in the mid-Atlantic United States (U.S.) between September and May (Hayes et al. 2022). 

Individuals of both species move to northern areas for mating and pupping in the spring and summer, and return to southerly areas in the fall and winter. In previous years, there was some debate about the southern range extent for both of these stocks in the Western North Atlantic.

Until 2018, NOAA Stock Assessment Reports (SARs) indicated that the gray and harbor seal populations range from New Jersey to Labrador; with scattered sightings and strandings reported as far south as North Carolina for gray seals and Florida for harbor seals (Hayes et al. 2018). Other researchers have reported that harbor and gray seal distribution along the U.S. Atlantic coast appears to be expanding or shifting (den Heyer et al. 2021, DiGiovianni et al. 2011, Johnston et al. 2015DiGiovianni et al. 2018). In Virginia, reports from local anglers, Chesapeake Bay Bridge Tunnel (CBBT) staff, and the Virginia Aquarium & Marine Science Center have indicated that seals have been using the CBBT rock armor or "islands" to haul out on for more than a decade. Additionally, annual pinniped stranding numbers have generally increased in Virginia since the early 1990s, with 2020 being a lower than average stranding year (Costidis et al. 2021). The apparent range expansion of harbor seals may be due to the rapid growth of gray seal populations in Canada and the Northeastern U.S. (den Heyer et al. 2021, Wood et al. 2022), which could be causing the displacement of harbor seals at haul-out sites (Cammen et al. 2018Pace et al. 2019Wood et al. 2019).

Within the last decade, harbor seals have been observed returning seasonally, from fall to spring, to haul-out locations in coastal Virginia, and gray seals are also occasionally observed during the winter, but not on a consistent basis (Ampela et al. 2023; Jones and Rees 2022). NOAA SARs now indicate the southern extent for the harbor seal population range is North Carolina. However, the geographic range for the gray seal population remains the same (Hayes et al. 2022).

This study aims to document seal presence at select haul-out locations in the lower Chesapeake Bay and coastal waters of Virginia, which are important areas to Navy training and testing activities. Haul-out counts and photo-identification (photo-ID) methods are being utilized in order to acquire a better understanding of the seals’ seasonal occurrence, habitat use, and haul-out patterns in this area. This study continues to provide valuable baseline information for the future assessment of seal movement, site fidelity and abundance in the mid-Atlantic region.


Technical Approach

A series of systematic, vessel-based counts of all seal species will be conducted at two different survey areas; 1) in the lower Chesapeake Bay along the CBBT, on the four “islands” (referred to as CBBT 1, CBBT 2, CBBT 3, and CBBT 4), and 2) on the southern tip of the Eastern Shore, which is comprised of about five main haul-out locations. Haul-out surveys will start in the fall (November) and end in the spring (April/May) to ensure documentation of seal arrival and departure for the season. During each survey, the number of seals hauled out and in the water will be recorded with associated environmental data (e.g. air and water temperature). The use of unmanned aircraft systems (e.g. drones) at the Eastern Shore survey area was added in 2018 to help improve count accuracy during vessel-based point counts and assess the distribution of pinnipeds in the region. Photographs of seals will be collected between counts for photo-ID for a mark-recapture study to estimate the local population abundance and to develop a local catalog.  A second approach for estimating abundance will also be attempted using seal count data from the CBBT and Eastern Shore survey areas as well as satellite telemetry data on harbor seal activity in Virginia waters (Ampela et al. 2023).

Progress & Results

As of the end of the 2021/2022 field season, a total of 122 survey days have been conducted across 8 field seasons (2014-2022) at the CBBT survey area. Seals have been consistently recorded from mid-November to April. For the Eastern Shore survey area, a total of 71 survey days have been conducted across 6 field seasons (2016-2022) and seals have been recorded from early November to April. The majority of seals observed at both survey areas were harbor seals. Gray seals have been occasionally sighted during the winter at both survey areas, although not on a consistent annual basis. For the CBBT, gray seal sightings were recorded for the 2014/2015 (n=1), 2015/2016 (n=2), and 2020/2021 (n=1) field seasons. For the Eastern Shore, gray seal sightings were recorded for the 2017/2018 (n=1), 2018/2019 (n=2), 2019/2020 (n=1), and 2020/2021 (n=4) field seasons; one gray seal was sighted off effort during the 2021/2022 season.

Since the start of the study in 2014, there has been a fluctuation in seal presence for the CBBT survey area, with an increasing trend in average and maximum seal count from 2014-2018, followed by a decrease from 2018 to 2020. For the 2020/2021 season, seal presence appeared to rebound with an increase in average seal count as well as maximum seal count for a single survey day. A slight decrease in these summary statistics were observed for the 2021/2022 season. A similar fluctuation in seal presence was observed for the Eastern Shore survey area, with an increase in average and maximum seal count from 2016 to 2018 and again for the 2019 to 2022 field seasons. Some of the lowest total, maximum, and average seal counts for the CBBT and Eastern Shore survey areas were reported for the 2018 to 2020 seasons as well as the 2021/2022 season. In addition, there was a statistically significant difference between the average seal counts across the eight field seasons (2014 to 2022) for the CBBT survey area. The drop in maximum and average seal count for the 2018 to 2020 seasons as well as the 2021/2022 season for the Eastern Shore survey area was not as substantial compared to the CBBT for these seasons, and the difference between average seal counts across six field seasons (2016 to 2022) was not statistically different. Potential trends will continue to be evaluated as more data is collected in the coming years.

Photo-ID analysis results identified 170 unique individuals from the 2015-2022 field seasons. Of the 170 individuals, 88 (52%) were observed only once and 82 (48%) were determined to be present in the study area on more than one occasion across the 7 field seasons, indicating at least some degree of seasonal site fidelity in the lower Chesapeake Bay and coastal Virginia waters. More than half of the identified harbor seals (56%) have been sighted at only the CBBT survey area, with a smaller percentage (35%) sighted at only the Eastern Shore survey area. Sixteen harbor seals were re-sighted at both survey areas on separate survey days within a season and across seasons. These results indicate that harbor seals make localized movements throughout the region during their seasonal occupancy and that while some seals may be utilizing a particular haul-out site within a given season, others may utilize multiple haul-out sites within a season.

A population abundance for harbor seals was estimated for the study area using mark-re-capture data and the Lincoln-Peterson model. A total of 198 individuals were estimated as the average abundance across all 7 seasons (2015-2022). Abundance estimates were also calculated for each field season from 2015-2022 using the mark-recapture data as well as from 2016-2022 using a telemetry correction factor approach incorporating seal count and satellite telemetry data (Ampela et al. 2023, Huber et al. 2001, Thompson et al. 1997). Abundance estimates produced from the mark-recapture data ranged from 81 (95% CI: 44.14-117.19) to 242 (95% CI: 91.35-392.65) individual harbor seals; whereas the estimates calculated using the telemetry correction factor were slightly higher in comparison for most seasons and ranged from 124 individuals (95% CI: 0 – 270.66) to 252 individuals (95% CI: 84.46-420.34). The margin of error was larger for the abundance estimates produced using the telemetry correction factor approach; potentially due to small sample sizes for both count and telemetry data for this type of calculation. A fluctuation in abundance estimates occurred across seasons for both approaches and regression analysis results indicate there is not a statistically significant trend in population abundance. Therefore, there is reason to believe that the population of animals utilizing the lower Chesapeake Bay and Eastern Shore, Virginia may be relatively stable.

Haul-out counts and photo-ID data collected for the 2022/2023 field season at both the CBBT and Eastern Shore survey areas are currently being analyzed and additional survey work is planned for 2023/2024.

Jones et al. poster 2022  |  |  Navy FOIA  |  DoD Accessibility/Section 508  |  No Fear Act  |  Open Government  |  Plain Writing Act  |  Veterans Crisis Line  |  DoD Safe Helpline  |  Navy SAPR  |  NCIS Tips  |  Privacy Policy  |  Contact Webmaster  
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